If Tomar a transitive verb, its object is Café, then why the Se? Levantarse is straightforward, it is a refexive verb. I have read: tomar la guitarra, tomar algo. Please explain, thank you

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If Tomar a transitive verb, its object is Café, then why the Se?
Levantarse is straightforward, it is a refexive verb. I have read: tomar la guitarra, tomar algo. Please explain, thank you.